Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs4753124 | chr11:93823235 | C/G | 4.76E-5 | 490 | 8.42 | 16.97 | 15.3 | KM Plot |
| THCA | rs475390 | chr1:41570459 | G/A | 4.52E-12 | 485 | 17.7 | 17.77 | 14.9 | KM Plot |
| THCA | rs4760169 | chr12:58118847 | T/C | 0.0002 | 483 | 14.9 | 18.03 | 16.8 | KM Plot |
| THCA | rs4760371 | chr12:58574139 | A/G | 0.000226 | 490 | 14.47 | 14 | 17.13 | KM Plot |
| THCA | rs4760647 | chr12:49278643 | G/A | 0.000182 | 466 | 17.23 | 15.9 | 14.28 | KM Plot |
| THCA | rs4760665 | chr12:49298503 | T/C | 0.000313 | 485 | 16.8 | 16.2 | 13.93 | KM Plot |
| THCA | rs4764130 | chr12:15021081 | A/T | 1.59E-6 | 490 | 17.02 | 14.8 | 10.17 | KM Plot |
| THCA | rs477335 | chr11:66388302 | T/G | 0.000222 | 488 | 16.27 | 14.3 | 14.9 | KM Plot |
| THCA | rs477481 | chr1:74761489 | G/A | 7.23E-10 | 487 | 15.9 | 16.8 | 7.77 | KM Plot |
| THCA | rs4783410 | chr16:20634309 | G/A | 4.78E-6 | 485 | 15.9 | 17.63 | 14.27 | KM Plot |
| THCA | rs4785381 | chr16:50133789 | C/T | 0.000266 | 486 | 16.07 | 16.37 | 15.67 | KM Plot |
| THCA | rs4805063 | chr19:34414398 | G/A | 7.66E-6 | 483 | 15.8 | 15.73 | 17.63 | KM Plot |
| THCA | rs4805949 | chr19:34411472 | C/T | 6.79E-6 | 478 | 15.9 | 15.63 | 17.38 | KM Plot |
| THCA | rs4805951 | chr19:34413964 | C/T | 8.39E-6 | 482 | 15.8 | 15.63 | 17.63 | KM Plot |
| THCA | rs4805953 | chr19:34414326 | G/A | 4.91E-7 | 483 | 15.9 | 16.07 | 17.13 | KM Plot |